| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 3B Miguel Cabrera Fla |
| 2 | 14th | SP Chris Carpenter StL |
| 3 | 35th | 1B Lance Berkman Hou |
| 4 | 38th | OF Adam Dunn Cin |
| 5 | 59th | SP Felix Hernandez Sea |
| 6 | 62nd | SP C.C. Sabathia Cle |
| 7 | 83rd | 2B Tadahito Iguchi ChA |
| 8 | 86th | OF Jim Edmonds StL |
| 9 | 107th | DH Jim Thome ChA |
| 10 | 110th | SP Javier Vazquez ChA |
| 11 | 131st | SP Mark Prior ChN |
| 12 | 134th | OF Scott Podsednik ChA |
| 13 | 155th | SP Francisco Liriano Min |
| 14 | 158th | SS Edgar Renteria Atl |
| 15 | 179th | SP Jeff Weaver Sea |
| 16 | 182nd | OF Garret Anderson LAA |
| 17 | 203rd | C Jason Kendall Oak |
| 18 | 206th | OF Shawn Green NYN |
| 19 | 227th | 1B Chris Shelton Det |
| 20 | 230th | SP Kenny Rogers Det |
| 21 | 251st | SP Bruce Chen Bal |
| 22 | 254th | SS Jack Wilson Pit |
| 23 | 275th | OF Wily Pena Bos |
| 24 | 278th | 3B Vinny Castilla Col |
| 25 | 299th | RP Joel Pineiro Bos |
| 26 | 302nd | 2B Jose Castillo Pit |
| 27 | 323rd | C Ryan Doumit Pit |
| 28 | 326th | OF Darin Erstad ChN |
| 29 | 347th | SP Ian Snell Pit |