| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Bobby Abreu NYA |
| 2 | 15th | SS Derek Jeter NYA |
| 3 | 34th | 1B Carlos Delgado NYN |
| 4 | 39th | OF Ichiro Suzuki Sea |
| 5 | 58th | SP Andy Pettitte Hou |
| 6 | 63rd | SP A.J. Burnett Tor |
| 7 | 82nd | 3B Chone Figgins LAA |
| 8 | 87th | C Jason Varitek Bos |
| 9 | 106th | SP Derek Lowe LAD |
| 10 | 111th | OF Shawn Green NYN |
| 11 | 130th | RP Jason Isringhausen StL |
| 12 | 135th | 2B Todd Walker SD |