| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 1B Mark Teixeira Tex |
| 2 | 20th | OF Alfonso Soriano ChA |
| 3 | 29th | SS Jimmy Rollins Phi |
| 4 | 44th | OF Gary Sheffield Det |
| 5 | 53rd | 2B Jorge Cantu TB |
| 6 | 68th | RP Mariano Rivera NYA |
| 7 | 77th | 3B Melvin Mora Bal |
| 8 | 92nd | C Ivan Rodriguez Det |
| 9 | 101st | SP Cliff Lee Cle |
| 10 | 116th | OF Cliff Floyd ChA |
| 11 | 125th | SP Scott Kazmir TB |
| 12 | 140th | RP Eric Gagne LAD |