| Round | Overall | Player |
|---|---|---|
| 1 | 8th | OF Jason Bay Pit |
| 2 | 17th | DH Travis Hafner Cle |
| 3 | 32nd | SP Jake Peavy SD |
| 4 | 41st | OF Gary Sheffield Det |
| 5 | 56th | RP Joe Nathan Min |
| 6 | 65th | SP Pedro Martinez NYN |
| 7 | 80th | RP Eric Gagne LAD |
| 8 | 89th | SP Brandon Webb Ari |
| 9 | 104th | SP John Patterson Was |
| 10 | 113th | 3B Chone Figgins LAA |
| 11 | 128th | 3B Melvin Mora Bal |
| 12 | 137th | OF Torii Hunter Min |
| 13 | 152nd | OF Magglio Ordonez Det |
| 14 | 161st | RP Tom Gordon Phi |
| 15 | 176th | SP Carlos Silva Min |
| 16 | 185th | SS Carlos Guillen Det |
| 17 | 200th | 1B Mike Jacobs Fla |
| 18 | 209th | SS Julio Lugo Bos |
| 19 | 224th | 2B Mark Ellis Oak |
| 20 | 233rd | SP Shawn Chacon Pit |
| 21 | 248th | OF Mike Cameron SD |
| 22 | 257th | 1B Conor Jackson Ari |
| 23 | 272nd | OF Randy Winn SF |
| 24 | 281st | C Michael Barrett ChN |
| 25 | 296th | RP Todd Jones Det |
| 26 | 305th | SP Jamie Moyer Phi |
| 27 | 320th | SP Ryan Madson Phi |
| 28 | 329th | OF David Dellucci Cle |
| 29 | 344th | 2B Orlando Hudson Ari |