| Round | Overall | Player |
|---|---|---|
| 1 | 6th | OF Manny Ramirez Bos |
| 2 | 19th | SS Derek Jeter NYA |
| 3 | 30th | 2B Marcus Giles Atl |
| 4 | 43rd | 3B Chipper Jones Atl |
| 5 | 54th | C Joe Mauer Min |
| 6 | 67th | SP John Smoltz Atl |
| 7 | 78th | OF Vernon Wells Tor |
| 8 | 91st | RP Jason Isringhausen StL |
| 9 | 102nd | SP Curt Schilling Bos |
| 10 | 115th | SP Cliff Lee Cle |
| 11 | 126th | SP Mike Mussina NYA |
| 12 | 139th | RP Ryan Dempster ChN |
| 13 | 150th | 1B Nomar Garciaparra LAD |
| 14 | 163rd | SP Doug Davis Ari |
| 15 | 174th | 1B Nick Johnson Was |
| 16 | 187th | OF Mark Kotsay Oak |
| 17 | 198th | SP Jose Contreras ChA |
| 18 | 211th | SP Kelvim Escobar LAA |
| 19 | 222nd | OF Ryan Freel Cin |
| 20 | 235th | OF Moises Alou SF |
| 21 | 246th | 3B Mike Lowell Bos |
| 22 | 259th | 1B Phil Nevin Min |
| 23 | 270th | SP Gavin Floyd ChN |
| 24 | 283rd | C Paul Lo Duca NYN |
| 25 | 294th | SP Jerome Williams ChN |
| 26 | 307th | OF Matt Murton ChN |
| 27 | 318th | SP Steve Trachsel NYN |
| 28 | 331st | SS Adam Everett Hou |
| 29 | 342nd | OF Shane Victorino Phi |