| Round | Overall | Player |
|---|---|---|
| 1 | 8th | 3B Chipper Jones Atl |
| 2 | 17th | OF Dante Bichette Col |
| 3 | 32nd | 2B Craig Biggio Hou |
| 4 | 41st | P Andy Pettitte NYA |
| 5 | 56th | 1B John Jaha Mil |
| 6 | 65th | 1B Tino Martinez NYA |
| 7 | 80th | SS Omar Vizquel Cle |
| 8 | 89th | OF Geronimo Berroa Bal |
| 9 | 104th | C Dan Wilson Sea |
| 10 | 113th | P Denny Neagle AtL |
| 11 | 128th | P Rod Beck SF |
| 12 | 137th | OF Paul O'Neill NYA |
| 13 | 152nd | P Ben McDonald Mil |
| 14 | 161st | P Billy Taylor Oak |
| 15 | 176th | P John Franco NYN |
| 16 | 185th | P Doug Drabek ChA |
| 17 | 200th | SS Kevin Elster Pit |
| 18 | 209th | 1B Mark Johnson Pit |
| 19 | 224th | OF Devon White Fla |
| 20 | 233rd | C Charles Johnson Fla |
| 21 | 248th | P Kevin Foster ChN |
| 22 | 257th | P Chan Ho Park LA |
| 23 | 272nd | P Esteban Loaiza Pit |
| 24 | 281st | P Mike Grace Phi |
| 25 | 296th | P Tim Wakefield Bos |
| 26 | 305th | 2B Steve Scarsone StL |