| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 1B David Ortiz Bos |
| 2 | 23rd | 1B Derrek Lee ChN |
| 3 | 26th | OF Bobby Abreu NYA |
| 4 | 47th | C Brian McCann Atl |
| 5 | 50th | 3B Troy Glaus Tor |
| 6 | 71st | DH Gary Sheffield Det |
| 7 | 74th | 2B Robinson Cano NYA |
| 8 | 95th | SP Jered Weaver LAA |
| 9 | 98th | SP Cole Hamels Phi |
| 10 | 119th | SP Tim Hudson Atl |
| 11 | 122nd | SP Chris Young SD |
| 12 | 143rd | DH Frank Thomas Tor |
| 13 | 146th | SP Chien-Ming Wang NYA |
| 14 | 167th | SP Chuck James Atl |
| 15 | 170th | OF Ken Griffey Jr Cin |
| 16 | 191st | SS Jhonny Peralta Cle |
| 17 | 194th | SP Jason Jennings Hou |
| 18 | 215th | OF Luke Scott Bal |
| 19 | 218th | 1B Ryan Garko Cle |
| 20 | 239th | SP Carl Pavano NYA |
| 21 | 242nd | SP Ian Snell Pit |
| 22 | 263rd | 3B Mike Lowell Bos |
| 23 | 266th | SP Zack Greinke KC |
| 24 | 287th | SP Taylor Tankersley Fla |
| 25 | 290th | RP Akinori Otsuka Tex |
| 26 | 311th | OF Coco Crisp Bos |
| 27 | 314th | 2B Jose Lopez Sea |
| 28 | 335th | C Gregg Zaun Tor |
| 29 | 338th | SS Ben Zobrist TB |