| Round | Overall | Player |
|---|---|---|
| 1 | 1st | 1B Albert Pujols StL |
| 2 | 24th | OF Jermaine Dye ChA |
| 3 | 25th | C Joe Mauer Min |
| 4 | 48th | SP Brandon Webb Ari |
| 5 | 49th | SP Jon Papelbon Bos |
| 6 | 72nd | 3B Chipper Jones Atl |
| 7 | 73rd | SS Rafael Furcal LAD |
| 8 | 96th | OF Rocco Baldelli TB |
| 9 | 97th | 2B Tadahito Iguchi Phi |
| 10 | 120th | OF J.D. Drew Bos |
| 11 | 121st | SP Jered Weaver LAA |
| 12 | 144th | SP Anibal Sanchez Fla |
| 13 | 145th | SP Jason Jennings Hou |
| 14 | 168th | SP Jake Westbrook Cle |
| 15 | 169th | SP Tom Glavine Atl |
| 16 | 192nd | 1B Nomar Garciaparra LAD |
| 17 | 193rd | SP Mark Buehrle ChA |
| 18 | 216th | SP Doug Davis Ari |
| 19 | 217th | SP Brandon McCarthy Tex |
| 20 | 240th | SP Roger Clemens NYA |
| 21 | 241st | OF Milton Bradley SD |
| 22 | 264th | 3B Casey Blake Cle |
| 23 | 265th | SP Jeff Francis Col |
| 24 | 288th | OF Jim Edmonds SD |
| 25 | 289th | SS Omar Vizquel SF |
| 26 | 312th | 2B Kelly Johnson Atl |
| 27 | 313th | C Gregg Zaun Tor |
| 28 | 336th | 3B Jose Bautista Pit |
| 29 | 337th | OF Scott Podsednik ChA |