| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 3B David Wright NYN |
| 2 | 18th | SS Miguel Tejada Hou |
| 3 | 31st | OF Vernon Wells Tor |
| 4 | 42nd | RP Huston Street Oak |
| 5 | 55th | SP Barry Zito SF |
| 6 | 66th | SP C.C. Sabathia Cle |
| 7 | 79th | RP Takashi Saito LAD |
| 8 | 90th | 2B Rickie Weeks Mil |
| 9 | 103rd | 3B Bill Hall Mil |
| 10 | 114th | 1B Adam LaRoche Pit |
| 11 | 127th | OF Brad Hawpe Col |
| 12 | 138th | DH Mike Piazza Oak |
| 13 | 151st | C Russell Martin LAD |
| 14 | 162nd | SP Mike Mussina NYA |
| 15 | 175th | SP Boof Bonser Min |
| 16 | 186th | 1B Conor Jackson Ari |
| 17 | 199th | 2B Brandon Phillips Cin |
| 18 | 210th | 3B Ty Wigginton Hou |
| 19 | 223rd | OF Josh Willingham Fla |
| 20 | 234th | RP Jose Valverde Hou |
| 21 | 247th | C Ben Molina SF |
| 22 | 258th | RP Ryan Dempster ChN |
| 23 | 271st | SP Jeff Suppan Mil |
| 24 | 282nd | SP Shawn Hill Was |
| 25 | 295th | SP Gil Meche KC |
| 26 | 306th | SP Joe Saunders LAA |
| 27 | 319th | SP Aaron Cook Col |
| 28 | 330th | SP Horacio Ramirez Sea |
| 29 | 343rd | OF Jason Kubel Min |