| Round | Overall | Player |
|---|---|---|
| 1 | 1st | 3B Alex Rodriguez NYA |
| 2 | 24th | C Victor Martinez Cle |
| 3 | 25th | OF Curtis Granderson Det |
| 4 | 48th | OF Bobby Abreu NYA |
| 5 | 49th | SP Roberto Hernandez Cle |
| 6 | 72nd | SS J.J. Hardy Mil |
| 7 | 73rd | DH Jim Thome ChA |
| 8 | 96th | 1B Carlos Guillen Det |
| 9 | 97th | OF Josh Hamilton Tex |
| 10 | 120th | SP Ben Sheets Mil |
| 11 | 121st | DH Gary Sheffield Det |
| 12 | 144th | SP Pedro Martinez NYN |
| 13 | 145th | RP Joe Borowski Cle |
| 14 | 168th | 2B Jeff Kent LAD |
| 15 | 169th | SP Rich Harden ChN |
| 16 | 192nd | SP Matt Garza TB |
| 17 | 193rd | RP B.J. Ryan Tor |
| 18 | 216th | DH Hank Blalock Tex |
| 19 | 217th | OF Jacoby Ellsbury Bos |
| 20 | 240th | C Mike Napoli LAA |
| 21 | 241st | 2B Aaron Hill Tor |
| 22 | 264th | SP Jose Contreras ChA |
| 23 | 265th | OF Steven Pearce Pit |
| 24 | 288th | SP Joe Saunders LAA |
| 25 | 289th | OF Garret Anderson LAA |
| 26 | 312th | SP Franklin Morales Col |
| 27 | 313th | 1B Lyle Overbay Tor |
| 28 | 336th | SS Cristian Guzman Was |
| 29 | 337th | SP Justin Germano SD |