| Round | Overall | Player |
|---|---|---|
| 1 | 8th | 3B David Wright NYN |
| 2 | 17th | OF Vladimir Guerrero LAA |
| 3 | 32nd | OF Carlos Lee Hou |
| 4 | 41st | SS Derek Jeter NYA |
| 5 | 56th | C Joe Mauer Min |
| 6 | 65th | OF Alexis Rios Tor |
| 7 | 80th | SP Felix Hernandez Sea |
| 8 | 89th | 1B Todd Helton Col |
| 9 | 104th | SP Brett Myers Phi |
| 10 | 113th | 2B Howie Kendrick LAA |
| 11 | 128th | 1B Carlos Delgado NYN |
| 12 | 137th | SP Jered Weaver LAA |
| 13 | 152nd | RP Huston Street Oak |
| 14 | 161st | OF Jeremy Hermida Fla |
| 15 | 176th | SP Oliver Perez NYN |
| 16 | 185th | RP Chad Cordero Was |
| 17 | 200th | 1B Conor Jackson Ari |
| 18 | 209th | 2B Freddy Sanchez Pit |
| 19 | 224th | SP Jake Westbrook Cle |
| 20 | 233rd | SS Yunel Escobar Atl |
| 21 | 248th | SP Brian Bannister KC |
| 22 | 257th | OF Jose Guillen KC |
| 23 | 272nd | 3B Melvin Mora Bal |
| 24 | 281st | SP George Sherrill Sea |
| 25 | 296th | OF Mike Cameron Mil |
| 26 | 305th | SP Ervin Santana LAA |
| 27 | 320th | SP Randy Wolf LAD |
| 28 | 329th | 1B Aubrey Huff Bal |
| 29 | 344th | C Gregg Zaun Bal |