| Round | Overall | Player |
|---|---|---|
| 1 | 7th | SS Hanley Ramirez Fla |
| 2 | 18th | OF Alfonso Soriano ChN |
| 3 | 31st | OF Magglio Ordonez Det |
| 4 | 42nd | SP Cole Hamels Phi |
| 5 | 55th | 2B Dan Uggla Fla |
| 6 | 66th | 1B Paul Konerko ChA |
| 7 | 79th | SP Roberto Hernandez Cle |
| 8 | 90th | 3B Mike Lowell Bos |
| 9 | 103rd | 3B Adrian Beltre Sea |
| 10 | 114th | RP Trevor Hoffman Mil |
| 11 | 127th | SP Pedro Martinez NYN |
| 12 | 138th | SP Javier Vazquez ChA |
| 13 | 151st | C Geovany Soto ChN |
| 14 | 162nd | SP Francisco Liriano Min |
| 15 | 175th | 1B Billy Butler KC |
| 16 | 186th | OF Aaron Rowand SF |
| 17 | 199th | RP Todd Jones Det |
| 18 | 210th | OF Lastings Milledge Was |
| 19 | 223rd | 2B Akinori Iwamura TB |
| 20 | 234th | 1B Jason Giambi Oak |
| 21 | 247th | SP Joba Chamberlain NYA |
| 22 | 258th | SP Jair Jurrjens Atl |
| 23 | 271st | SP Hiroki Kuroda LAD |
| 24 | 282nd | C Carlos Ruiz Phi |
| 25 | 295th | OF Wily Pena Was |
| 26 | 306th | 3B Jeff Keppinger Cin |
| 27 | 319th | OF Franklin Gutierrez Cle |
| 28 | 330th | SS Jason Bartlett TB |
| 29 | 343rd | SP Edison Volquez Cin |