| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 1B Prince Fielder Mil |
| 2 | 14th | OF Grady Sizemore Cle |
| 3 | 35th | 1B Carlos Pena TB |
| 4 | 38th | 3B Garrett Atkins Col |
| 5 | 59th | OF Hunter Pence Hou |
| 6 | 62nd | SP Felix Hernandez Sea |
| 7 | 83rd | 2B Rickie Weeks Mil |
| 8 | 86th | SP Chien-Ming Wang NYA |
| 9 | 107th | RP Takashi Saito Bos |
| 10 | 110th | SS Edgar Renteria Det |
| 11 | 131st | OF Matt Kemp LAD |
| 12 | 134th | RP Rafael Soriano Atl |
| 13 | 155th | 1B Ryan Garko Cle |
| 14 | 158th | OF Rick Ankiel StL |
| 15 | 179th | 3B Evan Longoria TB |
| 16 | 182nd | SS Orlando Cabrera ChA |
| 17 | 203rd | SP Jon Lester Bos |
| 18 | 206th | SP Jake Westbrook Cle |
| 19 | 227th | C J.R. Towles Hou |
| 20 | 230th | OF Justin Upton Ari |
| 21 | 251st | SP Ian Kennedy NYA |
| 22 | 254th | SP Ubaldo Jimenez Col |
| 23 | 275th | C Kurt Suzuki Oak |
| 24 | 278th | SP Manny Parra Mil |
| 25 | 299th | SP John Danks ChA |
| 26 | 302nd | SP Kenny Rogers Det |
| 27 | 323rd | 2B Jayson Nix Col |
| 28 | 326th | 3B Mike Lamb Min |
| 29 | 347th | SP George Sherrill Sea |