| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 1B Mark Teixeira NYA |
| 2 | 18th | 3B Alex Rodriguez NYA |
| 3 | 31st | 2B Dan Uggla Fla |
| 4 | 42nd | C Geovany Soto ChN |
| 5 | 55th | DH Vladimir Guerrero Tex |
| 6 | 66th | 1B Carlos Pena TB |
| 7 | 79th | 3B Mike Young Tex |
| 8 | 90th | OF Vernon Wells Tor |
| 9 | 103rd | SP Chien-Ming Wang NYA |
| 10 | 114th | SP Yovani Gallardo Mil |
| 11 | 127th | RP Bobby Jenks ChA |
| 12 | 138th | DH Pat Burrell TB |
| 13 | 151st | SP Chris Carpenter StL |
| 14 | 162nd | SS Mike Aviles KC |
| 15 | 175th | C Matt Wieters Bal |
| 16 | 186th | SP Chris Young SD |
| 17 | 199th | SP Jon Garland SD |
| 18 | 210th | RP Matt Capps Was |
| 19 | 223rd | DH Hank Blalock Tex |
| 20 | 234th | SP Mike Hampton Hou |
| 21 | 247th | OF Chris Dickerson Cin |
| 22 | 258th | C Jarrod Saltalamacchia Tex |
| 23 | 271st | SP Braden Looper Mil |
| 24 | 282nd | RP Troy Percival TB |
| 25 | 295th | OF Ryan Church Pit |
| 26 | 306th | C Gerald Laird Det |
| 27 | 319th | OF Mike Cameron Bos |
| 28 | 330th | 2B Clint Barmes Col |
| 29 | 343rd | SS Elvis Andrus Tex |