| Round | Overall | Player |
|---|---|---|
| 1 | 4th | 3B Alex Rodriguez NYA |
| 2 | 21st | SP Felix Hernandez Sea |
| 3 | 28th | DH Victor Martinez Det |
| 4 | 45th | SS Jose Reyes NYN |
| 5 | 52nd | OF Carl Crawford Bos |
| 6 | 69th | OF Manny Ramirez ChA |
| 7 | 76th | 1B Billy Butler KC |
| 8 | 93rd | SP Tommy Hanson Atl |
| 9 | 100th | OF Jason Heyward ATL |
| 10 | 117th | SP Jered Weaver LAA |
| 11 | 124th | 2B Howie Kendrick LAA |
| 12 | 141st | OF Alexis Rios ChA |
| 13 | 148th | RP Billy Wagner Atl |
| 14 | 165th | SP Francisco Liriano Min |
| 15 | 172nd | RP Trevor Hoffman Ret |
| 16 | 189th | C Russell Martin NYA |
| 17 | 196th | SP Jorge de la Rosa Col |
| 18 | 213th | OF Kyle Blanks SD |
| 19 | 220th | 2B Sean Rodriguez TB |
| 20 | 237th | SP Philip Hughes NYA |
| 21 | 244th | SS J.J. Hardy Bal |
| 22 | 261st | SP Franklin Morales Col |
| 23 | 268th | 3B Brandon Inge Det |
| 24 | 285th | 1B Matt LaPorta Cle |
| 25 | 292nd | SP Roberto Hernandez Cle |
| 26 | 309th | SP Shaun Marcum Mil |
| 27 | 316th | 1B Gaby Sanchez Fla |
| 28 | 333rd | SP Justin Duchscherer Oak |
| 29 | 340th | SP Michael Pelfrey NYN |