| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SS Hanley Ramirez Fla |
| 2 | 23rd | SP Zack Greinke Mil |
| 3 | 26th | 2B Aaron Hill Tor |
| 4 | 47th | RP Mariano Rivera NYA |
| 5 | 50th | 1B Kendrys Morales LAA |
| 6 | 71st | 3B Chone Figgins Sea |
| 7 | 74th | OF Shin-Soo Choo Cle |
| 8 | 95th | RP Francisco Cordero Cin |
| 9 | 98th | SP Jair Jurrjens Atl |
| 10 | 119th | OF Michael Cuddyer Min |
| 11 | 122nd | DH Jason Kubel Min |
| 12 | 143rd | OF Denard Span Min |
| 13 | 146th | SP Ryan Dempster ChN |
| 14 | 167th | SP Bronson Arroyo Cin |
| 15 | 170th | RP Mike Gonzalez Bal |
| 16 | 191st | C Chris Iannetta Col |
| 17 | 194th | 1B Paul Konerko ChA |
| 18 | 215th | OF Juan Rivera LAA |
| 19 | 218th | SP Zach Duke Ari |
| 20 | 239th | OF Michael Bourn Hou |
| 21 | 242nd | C Kelly Shoppach TB |
| 22 | 263rd | 3B Chase Headley SD |
| 23 | 266th | 3B Albert Callaspo LAA |
| 24 | 287th | SP Jason Marquis Was |
| 25 | 290th | SS Mike Aviles KC |
| 26 | 311th | OF Rajai Davis Oak |
| 27 | 314th | C Carlos Santana Cle |
| 28 | 335th | SP John Lannan Was |
| 29 | 338th | OF Scott Podsednik LAD |