| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | SS Hanley Ramirez Fla |
| 2 | 22nd | 3B Mark Reynolds Bal |
| 3 | 27th | SP Zack Greinke Mil |
| 4 | 46th | OF Jayson Werth Was |
| 5 | 51st | RP Jonathan Broxton LAD |
| 6 | 70th | RP Jon Papelbon Bos |
| 7 | 75th | OF Raul Ibanez Phi |
| 8 | 94th | 1B Billy Butler KC |
| 9 | 99th | OF Torii Hunter LAA |
| 10 | 118th | DH Jorge Posada NYA |
| 11 | 123rd | OF Shane Victorino Phi |
| 12 | 142nd | C Mike Napoli LAA |
| 13 | 147th | 2B Rickie Weeks Mil |
| 14 | 166th | SP Ben Sheets Oak |
| 15 | 171st | SP Randy Wolf Mil |
| 16 | 190th | SP Luke Hochevar KC |
| 17 | 195th | 2B Jose Lopez Col |
| 18 | 214th | OF Michael Bourn Hou |
| 19 | 219th | DH Hideki Matsui Oak |
| 20 | 238th | SP Erik Bedard Sea |
| 21 | 243rd | SP Gil Meche KC |
| 22 | 262nd | SP Nick Blackburn Min |
| 23 | 267th | SP Scott Feldman Tex |
| 24 | 286th | 3B Garrett Atkins Pit |
| 25 | 291st | SP John Lannan Was |
| 26 | 310th | DH Travis Hafner Cle |
| 27 | 315th | SP Zach Duke Ari |
| 28 | 334th | SP Jason Marquis Was |
| 29 | 339th | OF Rick Ankiel Atl |