| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 1B Adrian Gonzalez Bos |
| 2 | 13th | OF Matt Holliday StL |
| 3 | 36th | 1B Carlos Pena ChN |
| 4 | 37th | OF Shin-Soo Choo Cle |
| 5 | 60th | OF Andre Ethier LAD |
| 6 | 61st | SP Josh Johnson Fla |
| 7 | 84th | SP Ubaldo Jimenez Col |
| 8 | 85th | 2B Ben Zobrist TB |
| 9 | 108th | SP John Danks ChA |
| 10 | 109th | RP Andrew Bailey Oak |
| 11 | 132nd | 3B Ian Stewart Col |
| 12 | 133rd | SS Stephen Drew Ari |
| 13 | 156th | SP Ryan Dempster ChN |
| 14 | 157th | SP Edwin Jackson ChA |
| 15 | 180th | 1B Adam LaRoche Was |
| 16 | 181st | OF Michael Cuddyer Min |
| 17 | 204th | SP J.A. Happ Hou |
| 18 | 205th | OF J.D. Drew Bos |
| 19 | 228th | SP Jeff Niemann TB |
| 20 | 229th | SP Paul Maholm Pit |
| 21 | 252nd | OF Colby Rasmus StL |
| 22 | 253rd | SP Jon Garland LAD |
| 23 | 276th | C John Baker Fla |
| 24 | 277th | 3B Scott Rolen Cin |
| 25 | 300th | C Nick Hundley SD |
| 26 | 301st | 2B Skip Schumaker StL |
| 27 | 324th | SP Michael Pelfrey NYN |
| 28 | 325th | RP Jon Rauch Min |
| 29 | 348th | SP Clayton Richard SD |