| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 3B David Wright NYN |
| 2 | 18th | 1B Ryan Howard Phi |
| 3 | 31st | 2B Dan Uggla Atl |
| 4 | 42nd | SP Tommy Hanson Atl |
| 5 | 55th | SP Yovani Gallardo Mil |
| 6 | 66th | SP Philip Hughes NYA |
| 7 | 79th | C Matt Wieters Bal |
| 8 | 90th | SP Shaun Marcum Mil |
| 9 | 103rd | 3B Pedro Alvarez Pit |
| 10 | 114th | OF Drew Stubbs Cin |
| 11 | 127th | OF Austin Jackson Det |
| 12 | 138th | OF Adam Jones Bal |
| 13 | 151st | OF Carlos Lee Hou |
| 14 | 162nd | SP Dallas Braden Oak |
| 15 | 175th | RP Matt Thornton ChA |
| 16 | 186th | RP Ryan Franklin StL |
| 17 | 199th | RP Leo Nunez Fla |
| 18 | 210th | SS Asdrubal Cabrera Cle |
| 19 | 223rd | SS Ryan Theriot STL |
| 20 | 234th | OF Alfonso Soriano ChN |
| 21 | 247th | SP Edwin Jackson STL |
| 22 | 258th | 1B Daric Barton Oak |
| 23 | 271st | 2B Bill Hall SF |
| 24 | 282nd | C Yadier Molina StL |
| 25 | 295th | RP Brandon Lyon Hou |
| 26 | 306th | SP R.A. Dickey NYN |
| 27 | 319th | OF Franklin Gutierrez Sea |
| 28 | 330th | RP Alexi Ogando Tex |
| 29 | 343rd | DH Edwin Encarnacion Tor |