| Round | Overall | Player |
|---|---|---|
| 1 | 11th | OF Giancarlo Stanton Mia |
| 2 | 14th | 3B Evan Longoria TB |
| 3 | 35th | 1B Paul Goldschmidt Ari |
| 4 | 38th | C Carlos Santana Cle |
| 5 | 59th | SS Ian Desmond Was |
| 6 | 62nd | SP Johnny Cueto Cin |
| 7 | 83rd | SP Max Scherzer Det |
| 8 | 86th | RP Jon Papelbon Phi |
| 9 | 107th | SP Josh Johnson Tor |
| 10 | 110th | 2B Aaron Hill Ari |
| 11 | 131st | OF Adam Eaton Ari |
| 12 | 134th | SP Mike Minor Atl |
| 13 | 155th | SP Tom Milone Oak |
| 14 | 158th | SP Clay Buchholz Bos |
| 15 | 179th | SP A.J. Griffin Oak |
| 16 | 182nd | OF Nick Markakis Bal |
| 17 | 203rd | RP Chris Perez LAD |
| 18 | 206th | OF Michael Bourn Cle |
| 19 | 227th | SP Drew Smyly Det |
| 20 | 230th | OF Ryan Ludwick Cin |
| 21 | 251st | SP Wei-Yin Chen Bal |
| 22 | 254th | 3B Josh Donaldson Oak |
| 23 | 275th | OF Ben Revere Phi |
| 24 | 278th | C Wilson Ramos Was |
| 25 | 299th | RP Bobby Parnell NYN |
| 26 | 302nd | 2B Jordany Valdespin NYN |
| 27 | 323rd | SS Brandon Crawford SF |
| 28 | 326th | OF Andy Dirks Det |
| 29 | 347th | 1B Mitch Moreland Tex |