| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SS Troy Tulowitzki Col |
| 2 | 16th | 3B David Wright NYN |
| 3 | 33rd | OF Yoenis Cespedes Oak |
| 4 | 40th | SP Cole Hamels Phi |
| 5 | 57th | SP Jordan Zimmermann Was |
| 6 | 64th | OF Austin Jackson Det |
| 7 | 81st | SP Yu Darvish Tex |
| 8 | 88th | 1B Ike Davis NYN |
| 9 | 105th | 2B Rickie Weeks Mil |
| 10 | 112th | SP Brandon Morrow Tor |
| 11 | 129th | OF Nick Swisher Cle |
| 12 | 136th | SP Jarrod Parker Oak |
| 13 | 153rd | 1B Corey Hart Mil |
| 14 | 160th | SP Jeremy Hellickson TB |
| 15 | 177th | SP Anibal Sanchez Det |
| 16 | 184th | SP Jonathon Niese NYN |
| 17 | 201st | OF Torii Hunter Det |
| 18 | 208th | 1B Mark Reynolds NYA |
| 19 | 225th | 2B Danny Espinosa Was |
| 20 | 232nd | SS Alcides Escobar KC |
| 21 | 249th | C A.J. Pierzynski Tex |
| 22 | 256th | 3B Mike Young Phi |
| 23 | 273rd | SP Jorge de la Rosa Col |
| 24 | 280th | OF Angel Pagan SF |
| 25 | 297th | SP Chad Billingsley LAD |
| 26 | 304th | OF Jonny Gomes Bos |
| 27 | 321st | SP Brandon Beachy Atl |
| 28 | 328th | SP Chris Capuano LAD |
| 29 | 345th | SP John Danks ChA |