| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Jose Bautista Tor |
| 2 | 13th | OF Bryce Harper Was |
| 3 | 36th | 2B Ian Kinsler Det |
| 4 | 37th | 1B Joe Mauer Min |
| 5 | 60th | 1B Ryan Howard Phi |
| 6 | 61st | SS Jimmy Rollins Phi |
| 7 | 84th | OF Curtis Granderson NYN |
| 8 | 85th | 2B Jurickson Profar Tex |
| 9 | 108th | DH Adam Dunn ChA |
| 10 | 109th | OF Carlos Beltran NYA |
| 11 | 132nd | 3B Martin Prado Ari |
| 12 | 133rd | OF Josh Willingham Min |
| 13 | 156th | RP Joe Nathan Tex |
| 14 | 157th | SP Tim Hudson Atl |
| 15 | 180th | RP Huston Street SD |
| 16 | 181st | SP Trevor Cahill Ari |
| 17 | 204th | SP Alexander Cobb TB |
| 18 | 205th | 1B Brandon Moss Oak |
| 19 | 228th | SP Andy Pettitte NYA |
| 20 | 229th | SS Jed Lowrie Oak |
| 21 | 252nd | SP Michael Fiers Mil |
| 22 | 253rd | OF Alfonso Soriano NYA |
| 23 | 276th | 3B Matt Carpenter StL |
| 24 | 277th | SP James Mcdonald Pit |
| 25 | 300th | SP Shaun Marcum NYN |
| 26 | 301st | SP Jaime Garcia StL |
| 27 | 324th | OF Norichika Aoki KC |
| 28 | 325th | C John Jaso Oak |
| 29 | 348th | 2B Jemile Weeks Oak |