| Round | Overall | Player |
|---|---|---|
| 1 | 11th | OF Carlos Gonzalez Col |
| 2 | 14th | OF Justin Upton Atl |
| 3 | 35th | SP David Price TB |
| 4 | 38th | OF Bryce Harper Was |
| 5 | 59th | 3B Aramis Ramirez Mil |
| 6 | 62nd | 1B Ryan Howard Phi |
| 7 | 83rd | SP Roy Halladay Ret |
| 8 | 86th | 1B Mark Teixeira NYA |
| 9 | 107th | SP Jon Lester Bos |
| 10 | 110th | 2B Jason Kipnis Cle |
| 11 | 131st | 1B Ike Davis NYN |
| 12 | 134th | SP Dan Haren LAD |
| 13 | 155th | SS Derek Jeter NYA |
| 14 | 158th | SP Tim Lincecum SF |
| 15 | 179th | C Jonathan Lucroy Mil |
| 16 | 182nd | SP Trevor Cahill Ari |
| 17 | 203rd | SP Homer Bailey Cin |
| 18 | 206th | 2B Jose Altuve Hou |
| 19 | 227th | OF Carlos Quentin SD |
| 20 | 230th | RP Rafael Betancourt Col |
| 21 | 251st | OF Oscar Taveras StL |
| 22 | 254th | C Jarrod Saltalamacchia Mia |
| 23 | 275th | SS Zach Cozart Cin |
| 24 | 278th | SP Ricky Romero Tor |
| 25 | 299th | SP Chris Tillman Bal |
| 26 | 302nd | 2B Jurickson Profar Tex |
| 27 | 323rd | RP Sergio Santos Tor |
| 28 | 326th | SP Ted Lilly LAD |
| 29 | 347th | 3B Ryan Roberts TB |