| Round | Overall | Player |
|---|---|---|
| 1 | 8th | OF Andrew McCutchen Pit |
| 2 | 17th | 1B Edwin Encarnacion Tor |
| 3 | 32nd | SP Max Scherzer Det |
| 4 | 41st | 3B Matt Carpenter StL |
| 5 | 56th | 2B Chase Utley Phi |
| 6 | 65th | OF Josh Hamilton LAA |
| 7 | 80th | OF Carlos Gomez Mil |
| 8 | 89th | SP Mike Minor Atl |
| 9 | 104th | SP Anibal Sanchez Det |
| 10 | 113th | RP David Robertson NYA |
| 11 | 128th | C Evan Gattis Atl |
| 12 | 137th | SS J.J. Hardy Bal |
| 13 | 152nd | RP Koji Uehara Bos |
| 14 | 161st | OF Shane Victorino Bos |
| 15 | 176th | RP Alex Wood Atl |
| 16 | 185th | SP A.J. Griffin Oak |
| 17 | 200th | 1B Justin Morneau Col |
| 18 | 209th | 3B Anthony Rendon Was |
| 19 | 224th | SP A.J. Burnett Phi |
| 20 | 233rd | SP Taijuan Walker Sea |
| 21 | 248th | SP Neftali Feliz Tex |
| 22 | 257th | 3B Matt Dominguez Hou |
| 23 | 272nd | SS Erick Aybar LAA |
| 24 | 281st | OF Melvin Upton Atl |
| 25 | 296th | OF Leonys Martin Tex |
| 26 | 305th | SP Jeremy Guthrie KC |
| 27 | 320th | SP Felix Doubront Bos |
| 28 | 329th | DH Kendrys Morales Sea |
| 29 | 344th | C Geovany Soto Tex |