| Round | Overall | Player |
|---|---|---|
| 1 | 9th | OF Jose Bautista Tor |
| 2 | 16th | OF Carlos Gomez Hou |
| 3 | 33rd | 1B Albert Pujols LAA |
| 4 | 40th | SP Adam Wainwright StL |
| 5 | 57th | SP Corey Kluber Cle |
| 6 | 64th | RP Greg Holland KC |
| 7 | 81st | 2B Dustin Pedroia Bos |
| 8 | 88th | 3B Matt Carpenter StL |
| 9 | 105th | DH David Ortiz Bos |
| 10 | 112th | SP Tyson Ross SD |
| 11 | 129th | SP Garrett Richards LAA |
| 12 | 136th | C Brian McCann NYA |
| 13 | 153rd | OF Alex Gordon KC |
| 14 | 160th | RP Dellin Betances NYA |
| 15 | 177th | SP Homer Bailey Cin |
| 16 | 184th | 1B Matt Adams StL |
| 17 | 201st | RP Glen Perkins Min |
| 18 | 208th | SS Asdrubal Cabrera TB |
| 19 | 225th | OF Alexis Rios KC |
| 20 | 232nd | SP Drew Smyly TB |
| 21 | 249th | 3B Aramis Ramirez Pit |
| 22 | 256th | SS Erick Aybar LAA |
| 23 | 273rd | C Jarrod Saltalamacchia Ari |
| 24 | 280th | SP Clay Buchholz Bos |
| 25 | 297th | 2B Scooter Gennett Mil |
| 26 | 304th | SP Matt Garza Mil |
| 27 | 321st | OF Leonys Martin Tex |
| 28 | 328th | 3B Martin Prado Mia |
| 29 | 345th | SP Aaron Sanchez Tor |