| Round | Overall | Player |
|---|---|---|
| 1 | 9th |
P
Greg Maddux
|
| 2 | 16th |
P
Pedro Martinez
|
| 3 | 33rd |
P
Denny Neagle
|
| 4 | 40th |
P
Andy Pettitte
|
| 5 | 57th | P Chan Ho Park |
| 6 | 64th |
OF
David Justice
|
| 7 | 81st |
OF
Paul O'Neill
|
| 8 | 88th |
1B
John Jaha
|
| 9 | 105th | 3B Bobby Bonilla |
| 10 | 112th |
2B
Ray Durham
|
| 11 | 129th |
OF
Butch Huskey
|
| 12 | 136th |
DH
Chili Davis
|
| 13 | 153rd |
3B
Edgardo Alfonzo
|
| 14 | 160th |
OF
Magglio Ordonez
|
| 15 | 177th |
C
Jorge Fabregas
|
| 16 | 184th |
P
Jaime Navarro
|
| 17 | 201st |
P
Kerry Wood
|
| 18 | 208th |
P
Willie Blair
|
| 19 | 225th |
C
Scott Hatteberg
|
| 20 | 232nd |
SS
Jeff Blauser
|
| 21 | 249th |
OF
Matt Stairs
|
| 22 | 256th |
OF
Ruben Rivera
|
| 23 | 273rd |
P
Jason Bere
|
| 24 | 280th |
OF
Juan Encarnacion
|
| 25 | 297th |
1B
Will Clark
|
| 26 | 304th |
2B
Mickey Morandini
|