| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | OF Aaron Judge NYA |
| 2 | 22nd | 1B Anthony Rizzo ChN |
| 3 | 27th | SS Xander Bogaerts Bos |
| 4 | 46th | 3B Matt Carpenter StL |
| 5 | 51st | C Gary Sanchez NYA |
| 6 | 70th | SP Zack Greinke Ari |
| 7 | 75th | RP Aroldis Chapman NYA |
| 8 | 94th | SP Jon Lester ChN |
| 9 | 99th | 2B Robinson Cano NYN |
| 10 | 118th | OF Michael Brantley Hou |
| 11 | 123rd | 3B Justin Turner LAD |
| 12 | 142nd | OF Wil Myers SD |
| 13 | 147th | SP Jake Arrieta Phi |
| 14 | 166th | RP Cody Allen LAA |
| 15 | 171st | SP Nathan Eovaldi Bos |
| 16 | 190th | SP Hyun-Jin Ryu LAD |
| 17 | 195th | 2B Starlin Castro Mia |
| 18 | 214th | 1B Jay Bruce Phi |
| 19 | 219th | 3B Asdrubal Cabrera Tex |
| 20 | 238th | RP Hunter Strickland Was |
| 21 | 243rd | OF Christin Stewart Det |
| 22 | 262nd | SP Jesus Luzardo Oak |
| 23 | 267th | SS Fernando Tatis Jr. SD |
| 24 | 286th | SS Nick Ahmed Ari |
| 25 | 291st | C Willians Astudillo Min |
| 26 | 310th | OF Brett Gardner NYA |
| 27 | 315th | SP Kyle Gibson Min |
| 28 | 334th | SP Tanner Roark Cin |
| 29 | 339th | SP Lance Lynn Tex |