| Round | Overall | Player |
|---|---|---|
| 1 | 7th |
SS
Derek Jeter
|
| 2 | 18th |
2B
Chuck Knoblauch
|
| 3 | 31st |
C
Jason Kendall
|
| 4 | 42nd |
P
David Cone
|
| 5 | 55th |
1B
Tony Clark
|
| 6 | 66th | OF Raul Mondesi |
| 7 | 79th | OF Darin Erstad |
| 8 | 90th |
P
Bartolo Colon
|
| 9 | 103rd | P Chan Ho Park |
| 10 | 114th | P Ismael Valdez |
| 11 | 127th |
P
Justin Thompson
|
| 12 | 138th |
3B
Russ Davis
|
| 13 | 151st | 1B Eric Karros |
| 14 | 162nd | SS Mark Grudzielanek |
| 15 | 175th |
P
Chris Carpenter
|
| 16 | 186th |
3B
Eric Chavez
|
| 17 | 199th | P Ken Hill |
| 18 | 210th |
OF
Tony Gwynn
|
| 19 | 223rd |
P
Jason Schmidt
|
| 20 | 234th |
C
Mitch Meluskey
|
| 21 | 247th |
P
Omar Daal
|
| 22 | 258th |
OF
Carl Everett
|
| 23 | 271st |
2B
Carlos Febles
|
| 24 | 282nd |
P
Jimmy Haynes
|
| 25 | 295th |
OF
Ruben Rivera
|
| 26 | 306th |
P
Ramiro Mendoza
|