| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 3B Vinny Castilla Col |
| 2 | 20th | 2B Chuck Knoblauch NYA |
| 3 | 29th | C Javy Lopez Atl |
| 4 | 44th | P John Smoltz Atl |
| 5 | 53rd | 1B Todd Helton Col |
| 6 | 68th | OF Shawn Green Tor |
| 7 | 77th | P Bartolo Colon Cle |
| 8 | 92nd | OF Ben Grieve Oak |
| 9 | 101st | P Dustin Hermanson Mon |
| 10 | 116th | OF Jose Cruz Jr Tor |
| 11 | 125th | OF Shannon Stewart Tor |
| 12 | 140th | 1B Kevin Young Pit |
| 13 | 149th | P Chris Carpenter Tor |
| 14 | 164th | P Joey Hamilton Tor |
| 15 | 173rd | P Hideki Irabu NYA |
| 16 | 188th | P Shawn Estes SF |
| 17 | 197th | P Alex Fernandez Fla |
| 18 | 212th | SS Edgar Renteria StL |
| 19 | 221st | P Bruce Chen Atl |
| 20 | 236th | P Jose Silva Pit |
| 21 | 245th | SS Neifi Perez Col |
| 22 | 260th | 1B Jeff King KC |
| 23 | 269th | OF Jose Guillen Pit |
| 24 | 284th | P Steve Avery Cin |
| 25 | 293rd | C A.J. Hinch Oak |
| 26 | 308th | P Jose Rosado KC |