| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Sea |
| 2 | 24th | P Roger Clemens NYA |
| 3 | 25th | 2B Ray Durham ChA |
| 4 | 48th | OF Greg Vaughn Cin |
| 5 | 49th | C Jorge Posada NYA |
| 6 | 72nd | OF Darin Erstad Ana |
| 7 | 73rd | 3B Travis Fryman Cle |
| 8 | 96th | P Chuck Finley Ana |
| 9 | 97th | 1B Ryan Klesko Atl |
| 10 | 120th | P Rick Helling Tex |
| 11 | 121st | P Brad Radke Min |
| 12 | 144th | OF Cliff Floyd Fla |
| 13 | 145th | P Darren Dreifort LA |
| 14 | 168th | P Kelvim Escobar Tor |
| 15 | 169th | P John Franco NYN |
| 16 | 192nd | OF Devon White LA |
| 17 | 193rd | OF Rickey Henderson NYN |
| 18 | 216th | 1B Sean Casey Cin |
| 19 | 217th | 2B Homer Bush Tor |
| 20 | 240th | OF Steve Finley Ari |
| 21 | 241st | P Jose Mesa Sea |
| 22 | 264th | DH Shane Spencer NYA |
| 23 | 265th | C Joe Girardi NYA |
| 24 | 288th | 3B Bobby Smith TB |
| 25 | 289th | P Ramiro Mendoza NYA |
| 26 | 312th | P Randy Myers SD |