| Round | Overall | Player |
|---|---|---|
| 1 | 8th | 1B Jeff Bagwell Hou |
| 2 | 17th | 3B Scott Rolen Phi |
| 3 | 32nd | P Kevin Brown LA |
| 4 | 41st | 2B Damion Easley Det |
| 5 | 56th | P Troy Percival Ana |
| 6 | 65th | OF Raul Mondesi LA |
| 7 | 80th | C Dave Nilsson Mil |
| 8 | 89th | OF Brian Jordan Atl |
| 9 | 104th | P Andy Pettitte NYA |
| 10 | 113th | OF B.J. Surhoff Bal |
| 11 | 128th | 1B Jason Giambi Oak |
| 12 | 137th | SS Tony Batista Ari |
| 13 | 152nd | OF Dmitri Young Cin |
| 14 | 161st | P Pat Hentgen Tor |
| 15 | 176th | C Benito Santiago ChN |
| 16 | 185th | OF David Segui Sea |
| 17 | 200th | P Mark Wohlers Atl |
| 18 | 209th | 3B Fernando Tatis StL |
| 19 | 224th | P Steve Trachsel ChN |
| 20 | 233rd | OF Richard Hidalgo Hou |
| 21 | 248th | P Jeff Brantley Phi |
| 22 | 257th | P Chris Holt Hou |
| 23 | 272nd | 2B Carlos Guillen Sea |
| 24 | 281st | SS Ricky Gutierrez Hou |
| 25 | 296th | OF Trot Nixon Bos |
| 26 | 305th | P Pete Schourek Pit |