| Round | Overall | Player |
|---|---|---|
| 1 | 9th | OF Larry Walker Col |
| 2 | 16th | P Mariano Rivera NYA |
| 3 | 33rd | 3B Dean Palmer Det |
| 4 | 40th | P Billy Wagner Hou |
| 5 | 57th | OF Dante Bichette Col |
| 6 | 64th | P Tom Gordon Bos |
| 7 | 81st | 1B Eric Karros LA |
| 8 | 88th | C Todd Hundley LA |
| 9 | 105th | P Scott Erickson Bal |
| 10 | 112th | 2B Fernando Vina Mil |
| 11 | 129th | SS Mark Grudzielanek LA |
| 12 | 136th | OF Johnny Damon KC |
| 13 | 153rd | P Mike Timlin Bal |
| 14 | 160th | P Jose Lima Hou |
| 15 | 177th | OF Ron Gant Phi |
| 16 | 184th | OF Bobby Bonilla NYN |
| 17 | 201st | C Dan Wilson Sea |
| 18 | 208th | DH Mike Stanley Bos |
| 19 | 225th | 3B Russ Davis Sea |
| 20 | 232nd | P Robert Person Tor |
| 21 | 249th | OF Bubba Trammell TB |
| 22 | 256th | OF Brian L. Hunter Det |
| 23 | 273rd | OF Luis Gonzalez Ari |
| 24 | 280th | P Armando Benitez NYN |
| 25 | 297th | 1B Rico Brogna Phi |
| 26 | 304th | P Sidney Ponson Bal |