| Round | Overall | Player |
|---|---|---|
| 1 | 7th | OF Albert Belle Bal |
| 2 | 18th | C Jason Kendall Pit |
| 3 | 31st | 2B Jeff Kent SF |
| 4 | 42nd | OF J.D. Drew StL |
| 5 | 55th | P Ugueth Urbina Mon |
| 6 | 66th | 3B Dean Palmer Det |
| 7 | 79th | OF Brian Jordan Atl |
| 8 | 90th | SS Omar Vizquel Cle |
| 9 | 103rd | P Andy Pettitte NYA |
| 10 | 114th | P Jose Lima Hou |
| 11 | 127th | OF Jeromy Burnitz Mil |
| 12 | 138th | 1B Jason Giambi Oak |
| 13 | 151st | 2B Bret Boone Atl |
| 14 | 162nd | P Matt Morris StL |
| 15 | 175th | P Shawn Estes SF |
| 16 | 186th | P Brian Moehler Det |
| 17 | 199th | P Matt Mantei Fla |
| 18 | 210th | P Tim Belcher Ana |
| 19 | 223rd | OF Jose Guillen Pit |
| 20 | 234th | P Tim Wakefield Bos |
| 21 | 247th | P Javier Vazquez Mon |
| 22 | 258th | DH Mike Stanley Bos |
| 23 | 271st | 3B Troy Glaus Ana |
| 24 | 282nd | P Roy Halladay Tor |
| 25 | 295th | OF Gabe Kapler Det |
| 26 | 306th | 1B David Ortiz Min |