| Round | Overall | Player |
|---|---|---|
| 1 | 8th | OF Barry Bonds SF |
| 2 | 17th | 1B Mo Vaughn Ana |
| 3 | 32nd | OF Vladimir Guerrero Mon |
| 4 | 41st | P Robb Nen SF |
| 5 | 56th | OF Andruw Jones Atl |
| 6 | 65th | P Mike Jackson Cle |
| 7 | 80th | 1B Tony Clark Det |
| 8 | 89th | P Brad Radke Min |
| 9 | 104th | P Andy Benes Ari |
| 10 | 113th | P Pete Harnisch Cin |
| 11 | 128th | P Chuck Finley Ana |
| 12 | 137th | P Juan Guzman Bal |
| 13 | 152nd | P Dave Burba Cle |
| 14 | 161st | SS Mark Grudzielanek LA |
| 15 | 176th | P Charles Nagy Cle |
| 16 | 185th | 2B Jay Bell Ari |
| 17 | 200th | P Mark Gardner SF |
| 18 | 209th | OF Troy O'Leary Bos |
| 19 | 224th | 1B Jeff King KC |
| 20 | 233rd | P Mike Sirotka ChA |
| 21 | 248th | 2B Carlos Guillen Sea |
| 22 | 257th | C Sandy Alomar Jr. Cle |
| 23 | 272nd | 3B Greg Norton ChA |
| 24 | 281st | P Robert Person Tor |
| 25 | 296th | OF Lance Johnson ChN |
| 26 | 305th | C Kelly Stinnett Ari |