| Round | Overall | Player |
|---|---|---|
| 1 | 9th | P Roger Clemens NYA |
| 2 | 16th | C Ivan Rodriguez Tex |
| 3 | 33rd | P Jeff Shaw LA |
| 4 | 40th | SS Barry Larkin Cin |
| 5 | 57th | DH Edgar Martinez Sea |
| 6 | 64th | OF Ray Lankford StL |
| 7 | 81st | 2B Damion Easley Det |
| 8 | 88th | OF Paul O'Neill NYA |
| 9 | 105th | 3B Jeff Cirillo Mil |
| 10 | 112th | P Bartolo Colon Cle |
| 11 | 129th | P Kenny Rogers Oak |
| 12 | 136th | 1B Jose Offerman Bos |
| 13 | 153rd | P Rick Helling Tex |
| 14 | 160th | OF Tom Goodwin Tex |
| 15 | 177th | P Chris Carpenter Tor |
| 16 | 184th | P Roberto Hernandez TB |
| 17 | 201st | P Rich Loiselle Pit |
| 18 | 208th | OF Bobby Abreu Phi |
| 19 | 225th | P Bret Saberhagen Bos |
| 20 | 232nd | C Eli Marrero StL |
| 21 | 249th | 1B Richie Sexson Cle |
| 22 | 256th | P Ramon Martinez Bos |
| 23 | 273rd | SS Alex Gonzalez Tor |
| 24 | 280th | P Armando Benitez NYN |
| 25 | 297th | P James Baldwin ChA |
| 26 | 304th | OF Quinton McCracken TB |