| Round | Overall | Player |
|---|---|---|
| 1 | 8th | SS Nomar Garciaparra Bos |
| 2 | 17th | 2B Ray Durham ChA |
| 3 | 32nd | P Kevin Brown LA |
| 4 | 41st | P John Smoltz Atl |
| 5 | 56th | 1B Tony Clark Det |
| 6 | 65th | P Kerry Ligtenberg Atl |
| 7 | 80th | OF Raul Mondesi LA |
| 8 | 89th | OF Shannon Stewart Tor |
| 9 | 104th | OF Jose Cruz Jr Tor |
| 10 | 113th | P Andy Pettitte NYA |
| 11 | 128th | 1B Ryan Klesko Atl |
| 12 | 137th | SS Rich Aurilia SF |
| 13 | 152nd | 3B Bobby Smith TB |
| 14 | 161st | C Dan Wilson Sea |
| 15 | 176th | P Livan Hernandez Fla |
| 16 | 185th | P Tim Wakefield Bos |
| 17 | 200th | P Jaret Wright Cle |
| 18 | 209th | DH Randy Winn TB |
| 19 | 224th | OF Darryl Hamilton Col |
| 20 | 233rd | OF Geoff Jenkins Mil |
| 21 | 248th | P Bob Wickman Mil |
| 22 | 257th | OF Karim Garcia Det |
| 23 | 272nd | 2B Quilvio Veras SD |
| 24 | 281st | C Brad Ausmus Det |
| 25 | 296th | P Tony Saunders TB |
| 26 | 305th | 3B Gary Gaetti ChN |