| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | OF Ken Griffey Jr Sea |
| 2 | 22nd | 2B Chuck Knoblauch NYA |
| 3 | 27th | OF Juan Gonzalez Tex |
| 4 | 46th | OF J.D. Drew StL |
| 5 | 51st | 1B Todd Helton Col |
| 6 | 70th | P Bartolo Colon Cle |
| 7 | 75th | P Denny Neagle Cin |
| 8 | 94th | SS Mark Grudzielanek LA |
| 9 | 99th | P Dustin Hermanson Mon |
| 10 | 118th | P Kevin Millwood Atl |
| 11 | 123rd | P Chris Carpenter Tor |
| 12 | 142nd | 3B Scott Brosius NYA |
| 13 | 147th | 1B Jay Buhner Sea |
| 14 | 166th | P Roberto Hernandez TB |
| 15 | 171st | C Charles Johnson Bal |
| 16 | 190th | 2B Bret Boone Atl |
| 17 | 195th | P Pat Hentgen Tor |
| 18 | 214th | OF Reggie Sanders SD |
| 19 | 219th | OF Brian McRae NYN |
| 20 | 238th | P Ricardo Rincon Cle |
| 21 | 243rd | SS Alex Gonzalez Tor |
| 22 | 262nd | 3B Wade Boggs TB |
| 23 | 267th | 1B Wally Joyner SD |
| 24 | 286th | OF Doug Glanville Phi |
| 25 | 291st | C Jim Leyritz SD |
| 26 | 310th | P Sidney Ponson Bal |