| Round | Overall | Player |
|---|---|---|
| 1 | 8th | OF Barry Bonds SF |
| 2 | 17th | 3B Vinny Castilla Col |
| 3 | 32nd | 1B Tino Martinez NYA |
| 4 | 41st | P Trevor Hoffman SD |
| 5 | 56th | OF Jim Edmonds Ana |
| 6 | 65th | C Jorge Posada NYA |
| 7 | 80th | 2B Mike Lansing Col |
| 8 | 89th | SS Miguel Tejada Oak |
| 9 | 104th | OF Bob Higginson Det |
| 10 | 113th | 1B Jay Buhner Sea |
| 11 | 128th | P Chris Carpenter Tor |
| 12 | 137th | P Justin Thompson Det |
| 13 | 152nd | P Andy Benes Ari |
| 14 | 161st | P Pat Hentgen Tor |
| 15 | 176th | C A.J. Hinch Oak |
| 16 | 185th | P Robert Person Tor |
| 17 | 200th | 2B Carlos Guillen Sea |
| 18 | 209th | 1B David Ortiz Min |
| 19 | 224th | OF Mark Kotsay Fla |
| 20 | 233rd | P Alan Benes StL |
| 21 | 248th | P Bobby J. Jones NYN |
| 22 | 257th | P John Thomson Col |
| 23 | 272nd | P Hideo Nomo NYN |
| 24 | 281st | P Pedro Astacio Col |
| 25 | 296th | P Ryan Anderson Sea |
| 26 | 305th | P Kerry Wood ChN |