| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 1B Jeff Bagwell Hou |
| 2 | 14th | 2B Craig Biggio Hou |
| 3 | 35th | OF Gary Sheffield LA |
| 4 | 38th | OF Tim Salmon Ana |
| 5 | 59th | P John Smoltz Atl |
| 6 | 62nd | P Mike Mussina Bal |
| 7 | 83rd | OF Dante Bichette Col |
| 8 | 86th | P Rod Beck ChN |
| 9 | 107th | P Andy Ashby SD |
| 10 | 110th | SS Edgar Renteria StL |
| 11 | 131st | P Jose Lima Hou |
| 12 | 134th | OF David Justice Cle |
| 13 | 155th | P Kenny Rogers Oak |
| 14 | 158th | 3B Fernando Tatis StL |
| 15 | 179th | 3B Scott Brosius NYA |
| 16 | 182nd | 1B Kevin Young Pit |
| 17 | 203rd | C Dave Nilsson Mil |
| 18 | 206th | OF Eric Davis StL |
| 19 | 227th | P Joey Hamilton Tor |
| 20 | 230th | C Chris Widger Mon |
| 21 | 251st | P Bob Wickman Mil |
| 22 | 254th | OF B.J. Surhoff Bal |
| 23 | 275th | P Alex Fernandez Fla |
| 24 | 278th | C Darrin Fletcher Tor |
| 25 | 299th | SS Deivi Cruz Det |
| 26 | 302nd | P Rich Loiselle Pit |