| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | OF Ken Griffey Jr Sea |
| 2 | 23rd | 1B Jim Thome Cle |
| 3 | 26th | C Javy Lopez Atl |
| 4 | 47th | OF Greg Vaughn Cin |
| 5 | 50th | OF Shawn Green Tor |
| 6 | 71st | P John Wetteland Tex |
| 7 | 74th | P Tom Gordon Bos |
| 8 | 95th | P David Cone NYA |
| 9 | 98th | 2B Edgardo Alfonzo NYN |
| 10 | 119th | 1B Travis Lee Ari |
| 11 | 122nd | P Ismael Valdez LA |
| 12 | 143rd | P John Franco NYN |
| 13 | 146th | 3B Matt Williams Ari |
| 14 | 167th | 2B Delino DeShields Bal |
| 15 | 170th | P Jamie Moyer Sea |
| 16 | 191st | SS Mike Caruso ChA |
| 17 | 194th | P Jeff Montgomery KC |
| 18 | 215th | P Kevin Appier KC |
| 19 | 218th | P Todd Jones Det |
| 20 | 239th | OF Jeremy Giambi KC |
| 21 | 242nd | OF Brady Anderson Bal |
| 22 | 263rd | SS Alex Gonzalez Tor |
| 23 | 266th | P Tim Belcher Ana |
| 24 | 287th | P Matt Clement SD |
| 25 | 290th | C Benito Santiago ChN |
| 26 | 311th | OF Ruben Rivera SD |