| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SS Nomar Garciaparra Bos |
| 2 | 16th | 3B Scott Rolen Phi |
| 3 | 33rd | OF J.D. Drew StL |
| 4 | 40th | 2B Chuck Knoblauch NYA |
| 5 | 57th | 1B Todd Helton Col |
| 6 | 64th | P Chan Ho Park LA |
| 7 | 81st | OF Rusty Greer Tex |
| 8 | 88th | P Shane Reynolds Hou |
| 9 | 105th | OF Matt Lawton Min |
| 10 | 112th | P Mike Timlin Bal |
| 11 | 129th | 2B Eric Young LA |
| 12 | 136th | DH Matt Stairs Oak |
| 13 | 153rd | C Mitch Meluskey Hou |
| 14 | 160th | P Sterling Hitchcock SD |
| 15 | 177th | P Jeff Fassero Sea |
| 16 | 184th | P Jon Lieber ChN |
| 17 | 201st | 1B Paul Konerko ChA |
| 18 | 208th | P Steve Woodard Mil |
| 19 | 225th | OF Henry Rodriguez ChN |
| 20 | 232nd | P Roy Halladay Tor |
| 21 | 249th | P Mike Sirotka ChA |
| 22 | 256th | P Matt Anderson Det |
| 24 | 280th | SS Orlando Cabrera Mon |
| 25 | 297th | 3B Michael Barrett Mon |
| 26 | 304th | C Kelly Stinnett Ari |