| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 1B Mark McGwire StL |
| 2 | 20th | 2B Jeff Kent SF |
| 3 | 29th | C Jason Kendall Pit |
| 4 | 44th | 3B Dean Palmer Det |
| 5 | 53rd | OF Brian Jordan Atl |
| 6 | 68th | P Billy Wagner Hou |
| 7 | 77th | OF Raul Mondesi LA |
| 8 | 92nd | P Al Leiter NYN |
| 9 | 101st | OF Juan Encarnacion Det |
| 10 | 116th | P Brett Tomko Cin |
| 11 | 125th | P Kevin Millwood Atl |
| 12 | 140th | OF Ellis Burks SF |
| 13 | 149th | P Rolando Arrojo TB |
| 14 | 164th | SS Tony Batista Ari |
| 15 | 173rd | P Jose Mesa Sea |
| 16 | 188th | P John Rocker Atl |
| 17 | 197th | 1B Ryan Klesko Atl |
| 18 | 212th | OF Brian McRae NYN |
| 19 | 221st | 3B Troy Glaus Ana |
| 20 | 236th | SS Walt Weiss Atl |
| 21 | 245th | P Darryl Kile Col |
| 22 | 260th | OF Tom Goodwin Tex |
| 23 | 269th | P Kirk Rueter SF |
| 24 | 284th | 2B Carlos Febles KC |
| 25 | 293rd | C Jeff Reed Col |
| 26 | 308th | P Ramon Martinez Bos |