| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Juan Gonzalez Tex |
| 2 | 15th | 3B Chipper Jones Atl |
| 3 | 34th | SS Barry Larkin Cin |
| 4 | 39th | 1B Rafael Palmeiro Tex |
| 5 | 58th | P Tom Glavine Atl |
| 6 | 63rd | 2B Todd Walker Min |
| 7 | 82nd | OF Paul O'Neill NYA |
| 8 | 87th | OF Shannon Stewart Tor |
| 9 | 106th | P Todd Stottlemyre Ari |
| 10 | 111th | P Scott Erickson Bal |
| 11 | 130th | P Denny Neagle Cin |
| 12 | 135th | C Charles Johnson Bal |
| 13 | 154th | P Chuck Finley Ana |
| 14 | 159th | P Livan Hernandez Fla |
| 15 | 178th | 1B Will Clark Bal |
| 16 | 183rd | OF Magglio Ordonez ChA |
| 17 | 202nd | P Charles Nagy Cle |
| 18 | 207th | P Kevin Tapani ChN |
| 19 | 226th | P Juan Guzman Bal |
| 20 | 231st | P Tim Wakefield Bos |
| 21 | 250th | OF Tony Gwynn SD |
| 22 | 255th | 2B Tony Fernandez Tor |
| 23 | 274th | 1B Derrek Lee Fla |
| 24 | 279th | C Brad Ausmus Det |
| 25 | 298th | 3B Bobby Smith TB |
| 26 | 303rd | SS Pat Meares Pit |