| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | C Mike Piazza NYN |
| 2 | 22nd | DH Frank Thomas ChA |
| 3 | 27th | P Greg Maddux Atl |
| 4 | 46th | P Mariano Rivera NYA |
| 5 | 51st | OF Darin Erstad Ana |
| 6 | 70th | P Jeff Shaw LA |
| 7 | 75th | 2B Damion Easley Det |
| 8 | 94th | 3B Jeff Cirillo Mil |
| 9 | 99th | OF Cliff Floyd Fla |
| 10 | 118th | 1B Jason Giambi Oak |
| 11 | 123rd | OF Dmitri Young Cin |
| 12 | 142nd | P Mike Hampton Hou |
| 13 | 147th | P Rick Reed NYN |
| 14 | 166th | SS Neifi Perez Col |
| 15 | 171st | P Matt Morris StL |
| 16 | 190th | OF David Segui Sea |
| 17 | 195th | 1B Brad Fullmer Mon |
| 18 | 214th | P Carl Pavano Mon |
| 19 | 219th | P Shawn Estes SF |
| 20 | 238th | 2B Jay Bell Ari |
| 21 | 243rd | C Todd Greene Ana |
| 22 | 262nd | OF Carlos Beltran KC |
| 23 | 267th | P Mark Gardner SF |
| 24 | 286th | P Donovan Osborne StL |
| 25 | 291st | P Steve Trachsel ChN |
| 26 | 310th | 3B Jose Hernandez ChN |