| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Sea |
| 2 | 24th | P Randy Johnson Ari |
| 3 | 25th | OF Vladimir Guerrero Mon |
| 4 | 48th | 1B Tino Martinez NYA |
| 5 | 49th | P Al Leiter NYN |
| 6 | 72nd | 3B Robin Ventura NYN |
| 7 | 73rd | P Chan Ho Park LA |
| 8 | 96th | OF Brian Jordan Atl |
| 9 | 97th | OF Tim Salmon Ana |
| 10 | 120th | 2B Bret Boone Atl |
| 11 | 121st | P Ismael Valdez LA |
| 12 | 144th | P Denny Neagle Cin |
| 13 | 145th | OF Tony Gwynn SD |
| 14 | 168th | 3B Todd Zeile Tex |
| 15 | 169th | P Billy Taylor Oak |
| 16 | 192nd | 2B Marlon Anderson Phi |
| 17 | 193rd | C Jim Leyritz SD |
| 18 | 216th | P Darren Dreifort LA |
| 19 | 217th | 1B Sean Casey Cin |
| 20 | 240th | P Matt Clement SD |
| 21 | 241st | P Wilson Alvarez TB |
| 22 | 264th | P Jeff Brantley Phi |
| 23 | 265th | OF Mark Kotsay Fla |
| 24 | 288th | C Mitch Meluskey Hou |
| 25 | 289th | OF Butch Huskey Sea |
| 26 | 312th | P Gabe White Cin |
| 27 | 313th | P Sean Bergman Hou |