| Round | Overall | Player |
|---|---|---|
| 1 | 11th | OF Barry Bonds SF |
| 2 | 14th | 3B Scott Rolen Phi |
| 3 | 35th | P Jeff Shaw LA |
| 4 | 38th | OF Andruw Jones Atl |
| 5 | 59th | OF Darin Erstad Ana |
| 6 | 62nd | P Ugueth Urbina Mon |
| 7 | 83rd | 1B Travis Lee Ari |
| 8 | 86th | P Andy Pettitte NYA |
| 9 | 107th | P Andy Ashby SD |
| 10 | 110th | OF Rusty Greer Tex |
| 11 | 131st | P Chuck Finley Ana |
| 12 | 134th | C Charles Johnson Bal |
| 13 | 155th | SS Tony Batista Ari |
| 14 | 158th | P Gregg Olson Ari |
| 15 | 179th | 2B Delino DeShields Bal |
| 16 | 182nd | 3B Troy Glaus Ana |
| 17 | 203rd | SS Miguel Tejada Oak |
| 18 | 206th | P Chris Carpenter Tor |
| 19 | 227th | 1B Paul Konerko ChA |
| 20 | 230th | 2B Carlos Guillen Sea |
| 21 | 251st | C Terry Steinbach Min |
| 22 | 254th | P Tim Belcher Ana |
| 23 | 275th | OF Henry Rodriguez ChN |
| 24 | 278th | P Masato Yoshii NYN |
| 25 | 299th | P Armando Benitez NYN |
| 26 | 302nd | P Jose Rosado KC |
| 27 | 323rd | 1B Derrek Lee Fla |