| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 2B Craig Biggio Hou |
| 2 | 18th | P Pedro Martinez Bos |
| 3 | 31st | P Roger Clemens NYA |
| 4 | 42nd | 1B Tony Clark Det |
| 5 | 55th | 3B Dean Palmer Det |
| 6 | 66th | OF Kenny Lofton Cle |
| 7 | 79th | P Todd Jones Det |
| 8 | 90th | OF Shannon Stewart Tor |
| 9 | 103rd | OF Bobby Abreu Phi |
| 10 | 114th | P Roberto Hernandez TB |
| 11 | 127th | C Sandy Alomar Jr. Cle |
| 12 | 138th | P Hideki Irabu NYA |
| 13 | 151st | P Jaret Wright Cle |
| 14 | 162nd | SS Mark Grudzielanek LA |
| 15 | 175th | OF Eric Davis StL |
| 16 | 186th | P Tim Wakefield Bos |
| 17 | 199th | OF Dmitri Young Cin |
| 18 | 210th | OF Brian L. Hunter Det |
| 19 | 223rd | P Bruce Chen Atl |
| 20 | 234th | OF Gabe Kapler Det |
| 21 | 247th | P Matt Mantei Fla |
| 22 | 258th | SS Alex Gonzalez Tor |
| 23 | 271st | C A.J. Hinch Oak |
| 24 | 282nd | DH Randy Winn TB |
| 25 | 295th | OF Bernard Gilkey Ari |
| 26 | 306th | P Sidney Ponson Bal |
| 27 | 319th | P Stan Spencer SD |