| Round | Overall | Player |
|---|---|---|
| 1 | 11th | SS Derek Jeter NYA |
| 2 | 14th | 3B Vinny Castilla Col |
| 3 | 35th | C Jason Kendall Pit |
| 4 | 38th | P Trevor Hoffman SD |
| 5 | 59th | OF Shawn Green Tor |
| 6 | 62nd | OF Raul Mondesi LA |
| 7 | 83rd | P Mike Jackson Cle |
| 8 | 86th | P Rick Reed NYN |
| 9 | 107th | 2B Mike Lansing Col |
| 10 | 110th | P Ismael Valdez LA |
| 11 | 131st | DH Matt Stairs Oak |
| 12 | 134th | 1B Jose Offerman Bos |
| 13 | 155th | 1B Travis Lee Ari |
| 14 | 158th | P Jose Lima Hou |
| 15 | 179th | P Kelvim Escobar Tor |
| 16 | 182nd | OF Darryl Hamilton Col |
| 17 | 203rd | OF Brian S. Giles Pit |
| 18 | 206th | C Todd Greene Ana |
| 19 | 227th | P Matt Mantei Fla |
| 20 | 230th | 3B Troy Glaus Ana |
| 21 | 251st | P Sterling Hitchcock SD |
| 22 | 254th | OF Marquis Grissom Mil |
| 23 | 275th | P James Baldwin ChA |
| 24 | 278th | 1B Derrek Lee Fla |
| 25 | 299th | OF Garret Anderson Ana |
| 26 | 302nd | 2B Quilvio Veras SD |
| 27 | 323rd | SS Jeff Blauser ChN |