| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SS Nomar Garciaparra Bos |
| 2 | 16th | 3B Chipper Jones Atl |
| 3 | 33rd | P Mike Mussina Bal |
| 4 | 40th | 2B Ray Durham ChA |
| 5 | 57th | P Robb Nen SF |
| 6 | 64th | OF Andruw Jones Atl |
| 7 | 81st | 1B John Olerud NYN |
| 8 | 88th | OF Gary Sheffield LA |
| 9 | 105th | P Mike Timlin Bal |
| 10 | 112th | P Carlos Perez LA |
| 11 | 129th | OF Richard Hidalgo Hou |
| 12 | 136th | C Todd Hundley LA |
| 13 | 153rd | P Kevin Appier KC |
| 14 | 160th | 1B Ryan Klesko Atl |
| 15 | 177th | OF Juan Encarnacion Det |
| 16 | 184th | P Brian Moehler Det |
| 17 | 201st | C Scott Hatteberg Bos |
| 18 | 208th | OF Troy O'Leary Bos |
| 19 | 225th | P Juan Acevedo StL |
| 20 | 232nd | P Bruce Chen Atl |
| 21 | 249th | 1B Rico Brogna Phi |
| 22 | 256th | P Jose Rosado KC |
| 23 | 273rd | 2B Marlon Anderson Phi |
| 24 | 280th | P Chris Holt Hou |
| 25 | 297th | P Mark Leiter Sea |
| 26 | 304th | OF Al Martin Pit |
| 27 | 321st | SS Pat Meares Pit |