| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Sea |
| 2 | 24th | OF Larry Walker Col |
| 3 | 25th | OF Bernie Williams NYA |
| 4 | 48th | C Javy Lopez Atl |
| 5 | 49th | OF Darin Erstad Ana |
| 6 | 72nd | 1B Tino Martinez NYA |
| 7 | 73rd | P John Wetteland Tex |
| 8 | 96th | OF Jeromy Burnitz Mil |
| 9 | 97th | P John Franco NYN |
| 10 | 120th | OF Rusty Greer Tex |
| 11 | 121st | P Andy Ashby SD |
| 12 | 144th | P Justin Thompson Det |
| 13 | 145th | P Andy Benes Ari |
| 14 | 168th | P Shawn Estes SF |
| 15 | 169th | P Rick Aguilera Min |
| 16 | 192nd | P Jaret Wright Cle |
| 17 | 193rd | P Kirk Rueter SF |
| 18 | 216th | 3B Fernando Tatis StL |
| 19 | 217th | 1B Will Clark Bal |
| 20 | 240th | C Dave Nilsson Mil |
| 21 | 241st | P Bobby J. Jones NYN |
| 22 | 264th | OF Marty Cordova Min |
| 23 | 265th | 3B Shane Andrews Mon |
| 24 | 288th | 2B Jeff Frye Bos |
| 25 | 289th | P Robert Person Tor |
| 26 | 312th | 3B Aaron Boone Cin |
| 27 | 313th | P Darren Oliver StL |